Index

Symbols

--bamdir ATAC command line option --comparison ATAC command line option --downstreamuro ATAC command line option --fdr_cutoff ATAC command line option --featureuro ATAC command line option --fragsize ATAC command line option --genomefasta ATAC command line option --gp_alpha ATAC command line option --gp_timesteps ATAC command line option --gtf ATAC command line option --lfc_cutoff ATAC command line option --min_sigpeaks ATAC command line option --mitostring ATAC command line option --motifs ATAC command line option --outputdir ATAC command line option --peakset ATAC command line option --permutation_cutoff ATAC command line option

--permutation_iterations ATAC command line option --pseudocount ATAC command line option --readattractingregions ATAC command line option --samplesheet ATAC command line option --snakemakeprofile ATAC command line option --threads ATAC command line option --upstreamuro ATAC command line option -@ ATAC command line option -b ATAC command line option -f ATAC command line option -g ATAC command line option -i ATAC command line option -m ATAC command line option -o ATAC command line option -p ATAC command line option -r ATAC command line option

A

ATAC command line option --bamdir --comparison --downstreamuro --fdr_cutoff --featureuro --fragsize --genomefasta --gp_alpha --gp_timesteps --gtf --lfc_cutoff --min_sigpeaks --mitostring --motifs --outputdir --peakset --permutation_cutoff --permutation_iterations --pseudocount --readattractingregions --samplesheet --snakemakeprofile --threads --upstreamuro -@ -b -f -g -i -m -o -p -r